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View Structure Prediction Details

Protein: HERK_ARATH
Organism: Arabidopsis thaliana
Length: 830 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for HERK_ARATH.

Predicted Domain #1
Region A:
Residues: [1-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIEKFETFI LISTISILLC ICHGFTPVDN YLINCGSPTN GTLMGRIFLS DKLSSKLLTS  60
   61 SKEILASVGG NSGSDIYHTA RVFTEVSSYK FSVTRGRHWV RLYFNPFDYQ NFKMGSAKFA 120
  121 VSSQSHVLLS DFTVTSSKVV KEYSLNVTTN DLVLTFTPSS GSFAFVNAIE VISIPDTLIT 180
  181 GSPRFVGNPA QFPDMSMQGL ETIHRVNMGG PLVASNNDTL TRTWVPDSEF LLEKNLAKSM 240
  241 SKFSTVNFVP GYATEDSAPR TVYGSCTEMN SADNPNSIFN VTWEFDVDPG FQYYFRFHFC 300
  301 DIVSLSLNQL YFNLYVDSMV AATDIDLSTL VDNTLAGAYS MDFVTQTPKG SNKVRVSIGP 360
  361 STVHTDYPNA IVNGLEIMKM NNSKGQLSTG TFVPGSSSSS KSNLGLIVGS AIGSLLAVVF 420
  421 LGSCFVLYKK RKRGQDGHSK TWMPFSINGT SMGSKYSNG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.30103
Match: 3cigA
Description: No description for 3cigA was found.

Predicted Domain #2
Region A:
Residues: [460-830]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTLTSITTNA NYRIPFAAVK DATNNFDESR NIGVGGFGKV YKGELNDGTK VAVKRGNPKS  60
   61 QQGLAEFRTE IEMLSQFRHR HLVSLIGYCD ENNEMILIYE YMENGTVKSH LYGSGLPSLT 120
  121 WKQRLEICIG AARGLHYLHT GDSKPVIHRD VKSANILLDE NFMAKVADFG LSKTGPELDQ 180
  181 THVSTAVKGS FGYLDPEYFR RQQLTDKSDV YSFGVVLFEV LCARPVIDPT LPREMVNLAE 240
  241 WAMKWQKKGQ LDQIIDQSLR GNIRPDSLRK FAETGEKCLA DYGVDRPSMG DVLWNLEYAL 300
  301 QLQEAVIDGE PEDNSTNMIG ELPPQINNFS QGDTSVNVPG TAGRFEESSI DDLSGVSMSK 360
  361 VFSQLVKSEG R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.39794
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle