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View Structure Prediction Details

Protein: gi|7487647, gi|3...
Organism: Arabidopsis thaliana
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7487647, gi|3....

Description E-value Query
Range
Subject
Range
RL402_TRYCR - Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi PE=2 SV=1
224.0 [0..6] [309..39]

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Predicted Domain #1
Region A:
Residues: [1-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLSLQKKS QVDITFSIQT LSFSIHSSSV SIDTMISVII ENQSGSSFTI DVSFWDTVLM  60
   61 IKRKIEMTQG TPVSKQILIF KRKVLQDHLN MFGCQIRHNS RILLSISPDD NPTQNQVPQT 120
  121 NQSPSTPSNP IHEFVNNQDS PLSPQSSALT MEKFSKNQQD RPPLMRVVAK RIDNGSSRPS 180
  181 YSLDELLAPR DSSTVAVGSI RNRDQEVKNR ESSPSDSVEE VINFTDSPAM KMIVMLQPYG 240
  241 YTRMIQVEVT ADDNVEELRK ELVKMQERGE LNLPQGMYYL IHKHKQAVLH EDQSFLTNGV 300
  301 AYGDTIQISQ GYVKLTSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.522879
Match: 1oqyA
Description: Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle