YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1164_ARATH
Organism:	Arabidopsis thaliana
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1164_ARATH.

Description	E-value	Query Range	Subject Range
KLH20_XENLA - Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1	181.0	[0..6]	[198..45]
gi\|4650844 - gi\|4650844\|dbj\|BAA77027.1\| Kelch motif containing protein [Homo sapiens]	181.0	[0..6]	[198..50]
gi\|73960608 - gi\|73960608\|ref\|XP_861800.1\| PREDICTED: similar to kelch-like 20 isoform 5 [Canis familiaris] gi\|119611360 - gi\|119611360\|gb\|EAW90954.1\| kelch-like 20 (Drosophila), isoform CRA_c [Homo sapiens]	181.0	[0..6]	[198..50]
KLH20_PONAB - Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 gi\|55731256 - gi\|55731256\|emb\|CAH92342.1\| hypothetical protein [Pongo abelii]	181.0	[0..6]	[198..50]
gi\|60360602 - gi\|60360602\|dbj\|BAD90319.1\| mKIAA4210 protein [Mus musculus]	181.0	[0..6]	[198..88]
gi\|114565496 - gi\|114565496\|ref\|XP_001149345.1\| PREDICTED: similar to mKIAA4210 protein isoform 1 [Pan troglodytes]	181.0	[0..6]	[198..125]
gi\|55244234, gi\|... - gi\|58379439\|ref\|XP_309921.2\| ENSANGP00000015075 [Anopheles gambiae str. PEST], gi\|55244234\|gb\|EAA056...	181.0	[0..2]	[205..22]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV FRNMLDSDEC  60
   61 KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL YLAADKYDIS YLQDVCRNHF 120
  121 IAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2nn2A
Description:	No description for 2nn2A was found.

Predicted Domain #2

Region A:
Residues: [124-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSSRNVLDIL ELASIPCDTI LKDAAINHIV KHMEEVVVPM KYETFVQRNP DLSVEITRAY  60
   61 LRETKAKAKD HGAPLNGNTR PRIW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	2eqxA
Description:	No description for 2eqxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits