YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|4544377, gi|2...
Organism: Arabidopsis thaliana
Length: 80 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4544377, gi|2....

Description E-value Query
Range
Subject
Range
gi|42570789 - gi|42570789|ref|NP_973468.1| FUT4; fucosyltransferase [Arabidopsis thaliana]
110.0 [0..6] [65..294]

Back

Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYPKQMRD SGFKFEFFCD QGGYYQHVMD HLISCTQRQE TPVNISNIPK CKAVLVTSLT  60
   61 GEIIKAQGRH LDMLLIVFED 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.551 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.551 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.550 a.239.1 Description not found.
View Download 0.515 a.130.1 Chorismate mutase II
View Download 0.478 a.4.5 "Winged helix" DNA-binding domain
View Download 0.478 a.4.5 "Winged helix" DNA-binding domain
View Download 0.472 a.29.8 Description not found.
View Download 0.391 a.28.1 ACP-like
View Download 0.373 d.58.11 EF-G/eEF-2 domains III and V


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle