YRC Public Data Repository - Protein Structure Prediction

Protein:	MYB98_ARATH
Organism:	Arabidopsis thaliana
Length:	427 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYB98_ARATH.

Description	E-value	Query Range	Subject Range
gi\|76365135 - gi\|76365135\|gb\|ABA42061.1\| myb family transcription factor [Arabidopsis thaliana]	342.0	[0..1]	[427..1]
gi\|109109818 - gi\|109109818\|ref\|XP_001117960.1\| PREDICTED: small nuclear RNA activating complex, polypeptide 4, 190...	212.0	[0..78]	[318..262]
gi\|114609513 - gi\|114609513\|ref\|XP_518756.2\| PREDICTED: v-myb myeloblastosis viral oncogene homolog [Pan troglodyte...	211.0	[0..129]	[363..448]
gi\|73946020 - gi\|73946020\|ref\|XP_541112.2\| PREDICTED: similar to myeloblastosis proto-oncogene product isoform 2 [...	208.0	[0..128]	[363..131]
gi\|26353006 - gi\|26353006\|dbj\|BAC40133.1\| unnamed protein product [Mus musculus]	207.0	[0..125]	[388..4]
gi\|45504414 - gi\|45504414\|emb\|CAF04484.1\| unnamed protein product [Homo sapiens]	206.0	[0..125]	[363..4]
MYB_CHICK - Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1	205.0	[0..125]	[356..4]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFVDENGF ASLNQNIFTR DQEHMKEEDF PFEVVDQSKP TSFLQDFHHL DHDHQFDHHH  60
   61 HHGSSSSHPL LSVQTTSSCI NNAPFEHCSY QENMVDFYET KPNLMNHHHF QAVENSYFTR 120
  121 NHHHHQEINL VDEHDDPMDL EQNNMMMMRM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.267	c.48.1	TK C-terminal domain-like
View	Download	0.216	f.56.1	Description not found.

Predicted Domain #2

Region A:
Residues: [151-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPFDYPPTET FKPMNFVMPD EISCVSADND CYRATSFNKT KPFLTRKLSS SSSSSSWKET  60
   61 KKSTLVKGQW TAEEDRVLIQ LVEKYGLRKW SHIAQVLPGR IGKQCRERWH NHLRPDIKKE 120
  121 TWSEEEDRVL IEFHKEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQFSK RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.09691
Match:	1h88C
Description:	c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [323-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRSKYPRPSL LQDYIKSLNM GALMASSVPA RGRRRESNNK KKDVVVAVEE KKKEEEVYGQ  60
   61 DRIVPECVFT DDFGFNEKLL EEGCSIDSLL DDIPQPDIDA FVHGL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.233	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits