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View Structure Prediction Details

Protein: DTX3_ARATH
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTX3_ARATH.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
330.0 [0..2] [475..622]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLLQDE HLVPCKDTWK SGQVTVELKK VSSLAAPMAA VTIAQYLLPV ISVMVAGHNG  60
   61 ELQLSGVALA TSFTNVSGFS ILFGLAGALE TLCGQAYGAK QYEKIGTYTY SATASNIPIC 120
  121 VLISVLWIYI EKLLISLGQD PDISRVAGSY ALWLIPALFA HAFFIPLTRF LLAQGLVLPL 180
  181 LYCTLTTLLF HIPVCWAFVY AFGLGSNGAA MAISVSFWFY VVILSCYVRY SSSCDKTRVF 240
  241 VSSDFVSCIK QF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.657577
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [253-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHFGVPSAAM VCLEWWLFEL LILCSGLLPN PKLETSVLSI CLTTASLHYV IPGGVAAAVS  60
   61 TRVSNKLGAG IPQVARVSVL AGLCLWLVES AFFSTLLFTC RNIIGYAFSN SKEVVDYVAN 120
  121 LTPLLCLSFI LDGFTAVLNG VARGSGWQHI GALNNVVAYY LVGAPVGVYL AFNRELNGKG 180
  181 LWCGVVVGSA VQAIILAFVT ASINWKEQAE KARKRMVSSE NRLA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 29.853872
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle