YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PRS4A_ARATH
Organism: Arabidopsis thaliana
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS4A_ARATH.

Description E-value Query
Range
Subject
Range
gi|6652880 - gi|6652880|gb|AAF22522.1|AF123391_1 26S proteasome AAA-ATPase subunit RPT2a [Arabidopsis thaliana]
374.0 [0..1] [443..1]

Back

Predicted Domain #1
Region A:
Residues: [1-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK  60
   61 CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS KVDDLRGTPM SVGNLEELID 120
  121 ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE 180
  181 KAPLESYADI GGLEAQIQEI KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK 240
  241 AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA 300
  301 HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD 360
  361 IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA ICTEAGLLAL RERRMKVTHP 420
  421 DFKKAKEKVM FKKKEGVPEG LYM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.522879
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle