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View Structure Prediction Details

Protein: gi|25404771, gi|...
Organism: Arabidopsis thaliana
Length: 170 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404771, gi|....

Description E-value Query
Range
Subject
Range
gi|85116624 - gi|85116624|ref|XP_965093.1| hypothetical protein NCU02499 [Neurospora crassa OR74A]
gi|32422509, gi|... - gi|38567090|emb|CAE76386.1| conserved hypothetical protein [Neurospora crassa], gi|32422509|ref|XP_3...
155.0 [0..13] [169..20]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTAAGWSP VLAPIYSPVN TKPINFHFSA SFYKPPRPFY KQQNPISALH RSKTTRVIEV  60
   61 VTPKQRNRSF SV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.582 a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain
View Download 0.521 b.107.1 Urease metallochaperone UreE, N-terminal domain
View Download 0.495 a.144.1 PABC (PABP) domain
View Download 0.455 d.68.5 C-terminal domain of ProRS
View Download 0.454 a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain

Predicted Domain #2
Region A:
Residues: [73-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGSLADDSKL NPDEESNDSA EVASIDIKLP RRSLQVEFTC NSCGERTKRL INRHAYEKGL  60
   61 VFVQCAGCLK HHKLVDNLGL IVEYDFRETS KDLGTDHV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.09691
Match: 2e2zA
Description: No description for 2e2zA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle