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View Structure Prediction Details

Protein: SCL30_ARATH
Organism: Arabidopsis thaliana
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCL30_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593017 - gi|21593017|gb|AAM64966.1| scarecrow-like protein [Arabidopsis thaliana]
671.0 [0..1] [583..1]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL  60
   61 PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ DQTPISGDLE DGSLGNFSSI 120
  121 TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ 180
  181 GEATEKKTRH VKGSSNRYK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQKSDQPVDM RNLLMQCAQA VASFDQRRAF EKLKEIREHS SRHGDATQRL GYHFAEALEA  60
   61 RITGTMTTPI SATSSRTSMV DILKAYKGFV QACPTLIMCY FTANRTINEL ASKATTLHII 120
  121 DFGILYGFQW PCLIQALSKR DIGPPLLRVT GIELPQSGFR PSERVEETGR RLKRFCDKFN 180
  181 VPFEYSFIAK NWENITLDDL VINSGETTVV NCILRLQYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [419-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDETVSLNSP RDTALKLFRD INPDLFVFAE INGTYNSPFF LTRFREALFH CSSLFDMYET  60
   61 TLSEDDNCRT LVERELIIRD AMSVIACEGS ERFARPETYK QWQVRILRAG FRPAKLSKQI 120
  121 VKDGKEIVKE RYHKDFVIDN DNHWMFQGWK GRVLYAVSCW KPAKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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