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View Structure Prediction Details

Protein: gi|2464901, gi|1...
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2464901, gi|1....

Description E-value Query
Range
Subject
Range
gi|67668083, gi|... - gi|67668083|ref|ZP_00465278.1| General substrate transporter:Major facilitator superfamily [Burkhold...
235.0 [0..14] [484..1013]

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Predicted Domain #1
Region A:
Residues: [1-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHARTRTGI ISVAFKFFRS LFPRHHRTNS MKIKTGTFLG VSISLILINL AAIMERADEN  60
   61 LLPSVYKEVS EAFNAGPSDL GYLTFVRNFV QGLASPLAGV LVITYDRPIV LAIGTFCWAL 120
  121 STAAVGASSY FIQVALWRAV NGFGLAIVIP ALQSFIADSY KDGARGAGFG MLNLIGTIGG 180
  181 IGGGVVATVM AGSEFWGIPG WRCAFIMMAA LSAVIGLLVF LFVVDPRKNI EREELMAHKM 240
  241 NSNSVWNDSL AAAKSVVKVS TFQIIVAQGI IGSFPWTAMV FFTMWFELIG FDHNQTAALL 300
  301 GVFATGGAIG TLMGGIIADK MSRIYPNSGR VMCAQFSAFM GIPFSIILLK VIPQSTSSYS 360
  361 IFSITLFLMG LTITWCGSAV NAPMFAEVVP PRHRTMIYAF DRAFEGSFSS FAAPLVGILS 420
  421 EKLFGYDSRG IDPLKGSSVR EADALSKGLL SMMAVPFGLC CLCYTPLHFV FQKDRENAKI 480
  481 ASSKETEMI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.154902
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle