| Protein: | AG104_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 335 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AG104_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
250.0 | [0..1] | [275..1] |
|
|
248.0 | [0..1] | [276..1] |
|
|
246.0 | [0..1] | [276..1] |
|
|
245.0 | [0..1] | [276..1] |
|
|
243.0 | [0..1] | [276..1] |
|
|
243.0 | [0..1] | [276..1] |
|
|
242.0 | [0..1] | [276..1] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK 60
61 TRIEDVFSRF INLPKQERES ALY
|
| Detection Method: |  |
| Confidence: | 24.154902 |
| Match: | 1tqeP |
| Description: | Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [84-241] |
1 11 21 31 41 51
| | | | | |
1 FPDQNRRPDI QNKECLLRIL QQLKTENDIA LQVTNPAAIN SDVEELEHEV CRLQQQLQMA 60
61 EEELRRYEPD PIRFTTMEEY EVSEKQLLDT LTHVVQRRDH LMSNHLSSYE ASTMQPNIGG 120
121 PFVNDVVEGW LPENGTNQTH LFDASAHSNQ LRELSSAM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [242-335] |
1 11 21 31 41 51
| | | | | |
1 YEPLLQGSSS SSNQNNMSEC HVTNHNGEMF PEWAQAYSSS ALFASMQQQH EGVGPSIEEM 60
61 MPAQQSDIPG VTAETQVDHE VSDYETKVPQ LSSQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.388 | a.77.1 | DEATH domain |
| View | Download | 0.376 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.360 | a.118.1 | ARM repeat |
| View | Download | 0.299 | a.77.1 | DEATH domain |
| View | Download | 0.296 | d.26.1 | FKBP-like |
| View | Download | 0.296 | d.26.1 | FKBP-like |
| View | Download | 0.230 | a.60.5 | Barrier-to-autointegration factor, BAF |
