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View Structure Prediction Details

Protein: gi|20466578, gi|...
Organism: Arabidopsis thaliana
Length: 761 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20466578, gi|....

Description E-value Query
Range
Subject
Range
gi|73991096, gi|... - gi|73991096|ref|XP_857053.1| PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 10 [Canis...
944.0 [0..1] [760..5]

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Predicted Domain #1
Region A:
Residues: [1-761]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC  60
   61 RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD NNLPPELFPH STTVEYLCDS 120
  121 FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH 180
  181 CTKSYFFHGN KDCTKDQLLD QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF 240
  241 TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP 300
  301 GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA 360
  361 ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG LSSCGIFEIN CSKDIKVQGI 420
  421 IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ 480
  481 FYFQFLTYYQ HSNGQTRLRV TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET 540
  541 QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS 600
  601 PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL 660
  661 VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM SERFPTPRLV ICDQYGSQAR 720
  721 FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nupA
Description: No description for 2nupA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle