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View Structure Prediction Details

Protein: ELP1_ARATH
Organism: Arabidopsis thaliana
Length: 1319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ELP1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLKLFSEV PQNIQLHSTE EVVQFAAYDI DQSRLFFASS ANFVYALQLS SFQNESAGAK  60
   61 SAMPVEVCSI DIEPGDFITA FDYLAEKESL LIGTSHGLLL VHNVESDVTE LVGNIEGGVK 120
  121 CISPNPTGDL LGLITGLGQL LVMTYDWALM YEKALGEVPE GGYVRETNDL SVNCGGISIS 180
  181 WRGDGKYFAT MGEVYESGCM SKKIKIWESD SGALQSSSET KEFTQGILEW MPSGAKIAAV 240
  241 YKRKSDDSSP SIAFFERNGL ERSSFRIGEP EDATESCENL KWNSASDLLA GVVSCKTYDA 300
  301 IRVWFFSNNH WYLKQEIRYP REAGVTVMWD PTKPLQLICW TLSGQVSVRH FMWVTAVMED 360
  361 STAFVIDNSK ILVTPLSLSL MPPPMYLFSL SFSSAVRDIA YYSRNSKNCL AVFLSDGNLS 420
  421 FVEFPAPNTW EDLEGKDFSV EISDCKTALG SFVHLLWLDV HSLLCVSAYG SSHNKCLSSG 480
  481 GYDTELHGSY LQEVEVVCHE DHVPDQVTCS GFKASITFQT LLESPVLALA WNPSKRDSAF 540
  541 VEFEGGKVLG YASRSEIMET RSSDDSVCFP STCPWVRVAQ VDASGVHKPL ICGLDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.30103
Match: 1nr0A
Description: Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [597-688]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLSINGKN LCNNCSSFSF YSELANEVVT HLIILTKQDF LFIVDTKDVL NGDVALGNVF  60
   61 FVIDGRRRDE ENMSYVNIWE RGAKVIGVLN GD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.39794
Match: 1c5kA
Description: TolB, C-terminal domain; TolB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [689-783]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAAVILQTMR GNLECIYPRK LVLSSITNAL AQQRFKDAFN LVRRHRIDFN VIVDLYGWQA  60
   61 FLQSAVAFVE QVNNLNHVTE FVCAMKNEDV TETLY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [784-1319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKFSFSKKGD EVFRVKDSCS NKVSSVLQAI RKALEEHIPE SPSRELCILT TLARSDPPAI  60
   61 EESLLRIKSV REMELLNSSD DIRKKSCPSA EEALKHLLWL LDSEAVFEAA LGLYDLNLAA 120
  121 IVALNSQRDP KEFLPYLQEL EKMPESLMHF KIDIKLQRFD SALRNIVSAG VGYFPDCMNL 180
  181 IKKNPQLFPL GLLLITDPEK KLVVLEAWAD HLIDEKRFED AATTYLCCCK LEKASKAYRE 240
  241 CGDWSGVLRV GALMKLGKDE ILKLAYELCE EVNALGKPAE AAKIALEYCS DISGGISLLI 300
  301 NAREWEEALR VAFLHTADDR ISVVKSSALE CASGLVSEFK ESIEKVGKYL TRYLAVRQRR 360
  361 LLLAAKLKSE ERSVVDLDDD TASEASSNLS GMSAYTLGTR RGSAASVSSS NATSRARDLR 420
  421 RQRKSGKIRA GSAGEEMALV DHLKGMRMTD GGKRELKSLL ICLVTLGEME SAQKLQQTAE 480
  481 NFQVSQVAAV ELAHDTVSSE SVDEEVYCFE RYAQKTRSTA RDSDAFSWML KVFISP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1sjjA
Description: Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle