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View Structure Prediction Details

Protein: gi|11358481, gi|...
Organism: Arabidopsis thaliana
Length: 479 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358481, gi|....

Description E-value Query
Range
Subject
Range
gi|7549210 - gi|7549210|gb|AAF63787.1|AF142406_1 200 kDa antigen p200 [Babesia bigemina]
210.0 [0..2] [478..217]

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Predicted Domain #1
Region A:
Residues: [1-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGQREAER SAKAERAEAA ASLAAEDLKD INKGDVTYKL TERTTTTEPE RPGLIGSVMK  60
   61 AVQGTKDAVI GKSHDTAEST REGADIASEK AAGMRDTTGE VRDSTAQKTK ETADYTADKA 120
  121 REAKDKTADK TKETADYAAE KAREAKDRTA DKTKETAEYT AEKAREAKDK TADKLGEYKD 180
  181 YTAEKAKEAK DTTAEKLGEY KDYTVDKAKE AKDKTAEKAK ETAEYTSDKA RETKDKTAEK 240
  241 VGEYKDYTAE KAKETADKAR EAKDKTAEKV GEYRDYTAEK ATETKDAGVS KIGELKDSAV 300
  301 DTAKRAMGFL SGKTEETKQK AVETKDTAKE KMDEAGEEAR RKMEEMRLEG KKLDEDASRK 360
  361 TQQSTESAAD KAHETKDSVA QRGEEGKGSI MGALGNMTGA IK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [403-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLTGATTPS DEETRASAHG DESTGKTVVA VDVKDTRPGY VATVLKEADQ MTGQTFNDVG  60
   61 EIDDEEKVRI VVGEKKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle