YRC Public Data Repository - Protein Structure Prediction

Protein:	SDP1_ARATH
Organism:	Arabidopsis thaliana
Length:	825 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|92867978 - gi\|92867978\|gb\|ABE78088.1\| phospholipase, patatin family, putative [Medicago truncatula]	586.0	[0..1]	[813..1]
SDP1L_ARATH - Triacylglycerol lipase SDP1L OS=Arabidopsis thaliana GN=SDP1L PE=1 SV=1	541.0	[0..1]	[802..1]
gi\|115456133, gi... - gi\|50540749\|gb\|AAT77905.1\| putative patatin-like phospholipase [Oryza sativa (japonica cultivar-grou...	494.0	[0..1]	[811..1]
PLPL_ASPTN - Patatin-like phospholipase domain-containing protein ATEG_02594 OS=Aspergillus terreus (strain NIH 2...	407.0	[0..32]	[674..68]
gi\|49068686, gi\|... - gi\|71004996\|ref\|XP_757164.1\| hypothetical protein UM01017.1 [Ustilago maydis 521], ref\|XP_398632.1\| ...	401.0	[0..37]	[812..203]
PLPL_ASPFU - Patatin-like phospholipase domain-containing protein AFUA_1G04970 OS=Neosartorya fumigata (strain AT... gi\|159130722 - gi\|159130722\|gb\|EDP55835.1\| Patatin-like serine hydrolase, putative [Aspergillus fumigatus A1163] PLPL_ASPFU - Patatin-like phospholipase domain-containing protein AFUA_1G04970 OS=Aspergillus fumigatus GN=AFUA_1...	399.0	[0..27]	[678..64]
PLPL_YARLI - Patatin-like phospholipase domain-containing protein YALI0D16379g OS=Yarrowia lipolytica (strain CLI... PLPL_YARLI - Patatin-like phospholipase domain-containing protein YALI0D16379g OS=Yarrowia lipolytica GN=YALI0D16...	397.0	[0..9]	[642..192]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISNEASVD PFSIGPSSIM GRTIAFRVLF CRSMSQLRRD LFRFLLHWFL RFKLTVSPFV  60
   61 SWFHPRNPQG ILAVVTIIAF VLKRYTNVKI KAEMAYRRKF WRNMMRTALT YEEWAHAAKM 120
  121 LEKETPKMNE SDLYDEELVK NKLQELRHRR QEGSLRDIMF CMRADLVRNL GNMCNSELHK 180
  181 GRLQVPRHIK EYIDEVSTQL RMVCNSDSEE LSLEEKLSFM HETRHAF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRTALLLSGG ASLGAFHVGV VRTLVEHKLL PRIIAGSSVG SIICAVVASR SWPELQSFFE  60
   61 NSLHSLQFFD QLGGVFSIVK RVMTQGALHD IRQLQCMLRN LTSNLTFQEA YDMTGRILGI 120
  121 TVCSPRKHEP PRCLNYLTSP HVVIWSAVTA SCAFPGLFEA QELMAKDRSG EIVPYHPPFN 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.30103
Match:	1oxwA
Description:	Patatin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [409-625]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEVGTKSSS GRRWRDGSLE VDLPMMQLKE LFNVNHFIVS QANPHIAPLL RLKDLVRAYG  60
   61 GRFAAKLAHL VEMEVKHRCN QVLELGFPLG GLAKLFAQEW EGDVTVVMPA TLAQYSKIIQ 120
  121 NPTHVELQKA ANQGRRCTWE KLSAIKSNCG IELALDDSVA ILNHMRRLKK SAERAATATS 180
  181 SSHHGLASTT RFNASRRIPS WNVLARENST GSLDDLV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [626-825]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDNNLHASSG RNLSDSETES VELSSWTRTG GPLMRTASAN KFIDFVQSLD IDIALVRGFS  60
   61 SSPNSPAVPP GGSFTPSPRS IAAHSDIESN SNSNNLGTST SSITVTEGDL LQPERTSNGF 120
  121 VLNVVKRENL GMPSIGNQNT ELPESVQLDI PEKEMDCSSV SEHEEDDNDN EEEHNGSSLV 180
  181 TVSSEDSGLQ EPVSGSVIDA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits