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View Structure Prediction Details

Protein: gi|8885598, gi|5...
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8885598, gi|5....

Description E-value Query
Range
Subject
Range
gi|28393210 - gi|28393210|gb|AAO42035.1| putative protein kinase [Arabidopsis thaliana]
306.0 [0..1] [489..1]

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Predicted Domain #1
Region A:
Residues: [1-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCLHSKTAN LPSSDDPSAP NKPESVNGDQ VDQEIQNFKE FELNELRKAT NGFSPSCIVS  60
   61 EGGEKAPNVV YRGKLEGNHL VAIKRFSRQS WPDAQQFVVE ATGVGKLRNK RIVSLIGCCA 120
  121 EGDERLLVAE YMPNDTLSKH LFHWEKQPLP WDMRVRIADY IAEALDYCNI ENRKIYHDLN 180
  181 AYRILFDEEG DPRLSTFGLM KNSRDGKSYS TNLAYTPPEF LRTGRVIPES VIFSYGTILL 240
  241 DLLSGKHIPP SHALDIIRGK NALLLMDSSL EGQYANDDAT KLVDLASKCL QSEAKDRPDT 300
  301 KFLLSAVAPL QKQEEVASHV LMGLPKNTVI L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.522879
Match: 2qkwB
Description: No description for 2qkwB was found.

Predicted Domain #2
Region A:
Residues: [332-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTMLSPLGKA CAKMDLATFH DILLKTGYRD EEGAENELSF QEWTQQVQEM LNTKKFGDIA  60
   61 FRDKDFKNSI EYYSKLVGMM PVPSATVFAR RAFSYLMTDQ QELALRDAMQ AQVCIPEWPT 120
  121 AFYLQALALS KLGMETDAQD MLNDGAAYDA KRQNSWRC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 1na0A
Description: Designed protein cTPR3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle