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View Structure Prediction Details

Protein: PDV2_ARATH
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDV2_ARATH.

Description E-value Query
Range
Subject
Range
gi|34394506, gi|... - gi|50933825|ref|XP_476440.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|34394506|d...
377.0 [0..75] [307..10]

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Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDEEGIGLI LARATELRLK ISDCIDNSST TVSDNGDGNE DLSPGEGRKS EIIGNQDKDF  60
   61 DSISSEDVDE AEAERLLRIR DALEALESQL ASLQNLRQRQ QYEKQLALSE IDYSRKMLLE 120
  121 KLKEYKGKDF EVLRETTTFA GERVDYENDL LLPPYPVHPP LSLGLDNNNG YLSHLPSKKK 180
  181 SDANGFGSGH VRNEAEAKSP NGGSGGSSHG VIRFLGSVAK IVLPIIGVIS LLSASGYGPE 240
  241 MRKRGASLNL FGLLPHRATR GKRTPNQCPP GKVLVIEDGE ARCLVKERVE IPFDSVVAKR 300
  301 DVTYGYG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle