YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6056420, gi\|2...
Organism:	Arabidopsis thaliana
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6056420, gi|2....

Description	E-value	Query Range	Subject Range
gi\|7489163, gi\|2... - pir\|\|T01984 late-embryogenesis protein lea5 - common tobacco, gi\|2981167\|gb\|AAC06242.1\| late embryog...	138.0	[0..1]	[90..1]
gi\|3193289, gi\|7... - pir\|\|T01312 hypothetical protein T14P8.2 - Arabidopsis thaliana, gi\|7268998\|emb\|CAB80731.1\| AT4g023...	136.0	[0..1]	[91..110]
LEA5_CITSI - Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1	125.0	[0..1]	[90..1]
gi\|90404835, gi\|... - gi\|90404835\|gb\|ABD93883.1\| group 5 late embryogenesis abundant protein [Citrus unshiu], gi\|90404816\|...	124.0	[0..1]	[90..1]
gi\|255627541, gi... - pir\|\|T08871 desiccation protective protein LEA5 - soybean, gi\|255627541\|gb\|ACU14115.1\| unknown [Gly...	117.0	[0..1]	[89..1]
LEA5D_GOSHI - Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1	116.0	[0..1]	[90..1]
gi\|1172167, gi\|7... - pir\|\|T07161 late-embryogenesis protein homolog - tomato, gi\|170507\|gb\|AAA34193.1\| ORF, gi\|1172167\|g...	116.0	[0..1]	[90..1]
gi\|1370589 - gi\|1370589\|emb\|CAA66948.1\| protein induced upon tuberization [Solanum demissum]	116.0	[0..1]	[90..1]
gi\|76573297, gi\|... - gi\|77999305\|gb\|ABB16999.1\| unknown [Solanum tuberosum], gi\|76573297\|gb\|ABA46753.1\| unknown [Solanum ...	114.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLANAKI QSVFGSEKLS NAVFRRGFAA AAKTALDGSV STAEMKKRAG EASSEKAPWV  60
   61 PDPKTGYYRP ETVSEEIDPA ELRAILLNNK Q

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.823909
Match:	PF03242.4
Description:	No description for PF03242.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits