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View Structure Prediction Details

Protein: AB2C_ARATH
Organism: Arabidopsis thaliana
Length: 1623 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AB2C_ARATH.

Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEFIEWYC KPVPNGVWTK QVANAFGAYT PCATDSFVLG ISQLVLLVLC LYRIWLALKD  60
   61 HKVERFCLRS RLYNYFLALL AAYATAEPLF RLIMGISVLD FDGPGLPPFE AFGLGVKAFA 120
  121 WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV 180
  181 GAQVLFGILL FMHLPNLDTY PGYMPVRSET VDDYEYEEIS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD  60
   61 KELQKPQPWL LRALNNSLGG RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [331-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [391-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRKFQTGKIT NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV  60
   61 LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF QSKVQTVRDD 120
  121 ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL 180
  181 FMLPNIITQV VNANVSLKRL EEVLATEERI LLPNPPIEPG EP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [613-848]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AISIRNGYFS WDSKGDRPTL SNINLDVPLG SLVAVVGSTG EGKTSLISAI LGELPATSDA  60
   61 IVTLRGSVAY VPQVSWIFNA TVRDNILFGS PFDREKYERA IDVTSLKHDL ELLPGGDLTE 120
  121 IGERGVNISG GQKQRVSMAR AVYSNSDVYI FDDPLSALDA HVGQQVFEKC IKRELGQKTR 180
  181 VLVTNQLHFL SQVDRIVLVH EGTVKEEGTY EELSSNGPLF QRLMENAGKV EEYSEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.30103
Match: 2cbzA
Description: No description for 2cbzA was found.

Predicted Domain #6
Region A:
Residues: [849-1481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGEAEADQTA EQPVANGNTN GLQMDGSDDK KSKEGNKKGG KSVLIKQEER ETGVVSWRVL  60
   61 KRYQDALGGA WVVMMLLLCY VLTEVFRVTS STWLSEWTDA GTPKSHGPLF YNLIYALLSF 120
  121 GQVLVTLTNS YWLIMSSLYA AKKLHDNMLH SILRAPMSFF HTNPLGRIIN RFAKDLGDID 180
  181 RTVAVFVNMF MGQVSQLLST VVLIGIVSTL SLWAIMPLLV LFYGAYLYYQ NTAREVKRMD 240
  241 SISRSPVYAQ FGEALNGLST IRAYKAYDRM ADINGRSMDN NIRFTLVNMG ANRWLGIRLE 300
  301 TLGGLMIWLT ASFAVMQNGR AENQQAFAST MGLLLSYALN ITSLLTGVLR LASLAENSLN 360
  361 AVERVGNYIE IPPEAPPVIE NNRPPPGWPS SGSIKFEDVV LRYRPQLPPV LHGVSFFIHP 420
  421 TDKVGIVGRT GAGKSSLLNA LFRIVEVEKG RILIDDCDVG KFGLMDLRKV LGIIPQSPVL 480
  481 FSGTVRFNLD PFGEHNDADL WESLERAHLK DTIRRNPLGL DAEVSEAGEN FSVGQRQLLS 540
  541 LSRALLRRSK ILVLDEATAA VDVRTDALIQ KTIREEFKSC TMLIIAHRLN TIIDCDKILV 600
  601 LDSGRVQEFS SPENLLSNEG SSFSKMVQST GAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.0
Match: 3b5xA
Description: No description for 3b5xA was found.

Predicted Domain #7
Region A:
Residues: [1482-1623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAEYLRSLVL DNKRAKDDSH HLQGQRKWLA SSRWAAAAQF ALAASLTSSH NDLQSLEIED  60
   61 DSSILKRTND AVVTLRSVLE GKHDKEIAES LEEHNISREG WLSSLYRMVE GLAVMSRLAR 120
  121 NRMQQPDYNF EGNTFDWDNV EM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 2it1A
Description: No description for 2it1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle