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View Structure Prediction Details

Protein: gi|15225709, gi|...
Organism: Arabidopsis thaliana
Length: 704 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15225709, gi|....

Description E-value Query
Range
Subject
Range
CND2_ARATH - Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1
666.0 [0..1] [704..1]
gi|67972290 - gi|67972290|dbj|BAE02487.1| unnamed protein product [Macaca fascicularis]
618.0 [0..5] [702..27]
gi|114578904 - gi|114578904|ref|XP_001148527.1| PREDICTED: barren isoform 2 [Pan troglodytes]
609.0 [0..5] [702..27]
gi|559715 - gi|559715|dbj|BAA07556.1| HCAP-H [Homo sapiens]
603.0 [0..5] [702..33]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESLTPNPK QKPASTTTRI QAPTSPFFLG SNDDRLEREQ ARAARAAASR RRSVIFARGS  60
   61 QPETESDPCF DKQQILELFQ NCIKLASENK INQKNTWELN LIDHLCEIIK VEDENNTETN 120
  121 FQKASCTLEA GVKIYSMRVD SVHSEAYKVL GGITRAGHDD GGDHEDAAGA VENATNQKKQ 180
  181 PEKKISPLST LEPSFDALNV KKFDVAFAVD PLYHQTSAQF DEGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [225-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKGLLLNNLG VYGGCQVLFD SQEIPGKLVS SANKHDKSET IDLSFVKGLA LLADMPRSTI  60
   61 VHVLLHYAFS DVVVKFVECV EQMVLNMRKK DEIVPSLRAI INQFDEENQR PSDTFSCGQQ 120
  121 TTESFDISHG NDASYADDDE GYENFGTSFD YEGQSGDVDE NFGPNEAEPI YSNFHEEVEP 180
  181 ASLQDMDSDD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [415-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLENVDDYLF LSLGISSKQN SWAGPDHWKY RKTKGPDVQP ASEIKSSPPA KKTRKKKQAE  60
   61 PELDFAKALE EEMPDIFAPP KNPKTLLLPA SRTPCQTKLP EDCHYQPENL IKLFLLPNVM 120
  121 VWLAKHRPSE TSRQQPD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [552-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYEHGESWGN DNVYDDDDGP FDDNENDQSD AEDTNTLISQ PRQVNKIDVQ YDKASKQVDV  60
   61 QVLKETLWEC LQESHQPPIQ NLIVQDEEHQ QEPPESRSFK VLLASFPDDC QAAERTQDIS 120
  121 PHLCFICLLH LANEHNLSLI GSQNLDDLTI HLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle