YRC Public Data Repository - Protein Structure Prediction

Protein:	BCP1_ARATH
Organism:	Arabidopsis thaliana
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|15221772, gi\|... - gi\|15221772\|ref\|NP_173860.1\| BCP1 (Brassica campestris pollen protein 1) [Arabidopsis thaliana], gi\|...	127.0	[0..1]	[109..1]
gi\|448272\|prf\|\|1... - Bgp1 gene gi\|486757, gi\|44... - pir\|\|S35236 anther-specific protein (clone Bgp1) - field mustard, gi\|448272\|prf\|\|1916399A Bgp1 gene...	90.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQNIVVVV ALVFMAIIGL AAAASSPSPS ASPSKAPAAS KTDHVEAPVT DDQIGTTDDD  60
   61 AAPTPGDGDV AVAGPLGSDS SYDNAPTGSA DSAKSGAAAL GVSAVVVGVT SIAGSFLLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits