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View Structure Prediction Details

Protein: RPE5C_ARATH
Organism: Arabidopsis thaliana
Length: 233 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPE5C_ARATH.

Description E-value Query
Range
Subject
Range
gi|92877780 - gi|92877780|gb|ABE84760.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago t...
289.0 [0..27] [233..160]

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Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA  60
   61 ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF MGTEPITVKS VRALHIQISN 120
  121 NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE 180
  181 QLLRKHALED KQLPYLQEKD SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 1dzfA
Description: Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle