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View Structure Prediction Details

Protein: gi|7435679, gi|1...
Organism: Arabidopsis thaliana
Length: 765 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7435679, gi|1....

Description E-value Query
Range
Subject
Range
gi|4115927 - gi|4115927|gb|AAD03438.1| similar to the subtilase family of serine proteases (Pfam: PF00082, Score=...
651.0 [0..1] [765..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAVSCREP VLRARYSTII YVHIVYLGEK QHDDPEFVTE SHHRMLWSLL GSKEEAHGSM  60
   61 VHSFRHGFSG FAAKLTESQA KKIADLPEVV HVIPDRFYKP ATTRTW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 2p4eP
Description: No description for 2p4eP was found.

Predicted Domain #2
Region A:
Residues: [107-765]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYLGLSPTNP KNLLNQTNMG EQMIIGIIDS GVWPESEVFN DNEIGPVPSH WKGGCESGED  60
   61 FNSSHCNKKL IGAKYFINAF LATHESFNSS ESLDFISPRG YNGHGTHVAT IAGGSYVPNT 120
  121 SYKGLAGGTV RGGAPRARIA VYKTCWYLDL DIAACSSADI LKAMDEAIHD GVDVLSLSLG 180
  181 FEPLYPETDV RDGIATGAFH AVLKGITVVC AAGNAGPAAQ TVGNTAPWIL TVAATTLDRS 240
  241 FVTPMTLGNN KVILGQAIYT GTEVGFTSLV YPENPGNSNE SFSGTCERLL INSNRTMAGK 300
  301 VVLCFTESPY SISVTRAAHY VKRAGGLGVI IAGQPGNVLR PCLDDFPCVA VDYELGTYIL 360
  361 FYIRSNGSPV VKIQPSRTLI GQPVGTKVAS FSSRGPNPIS AAILKPDIAA PGVSILAATT 420
  421 TNTTFNDRGF IFLSGTSMAT PTISGIVALL KALHPDWSPA AIRSAIVTTA WRTDPFGEQI 480
  481 FAEGSPRKPA DPFDYGGGLV NPEKATKPGL VYDLGLEDYV LYMCSVGYNE TSISQLVGKG 540
  541 TVCSYPKPSV LDFNLPSITI PNLKEEVTLP RTLTNVGPLE SVYRVAVEPP LGTQVTVTPE 600
  601 TLVFNSTTKR VSFKVSVSTT HKINTGYYFG SLTWSDSLHN VTIPLSVRTQ LLPYYYDEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 1xf1A
Description: Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle