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View Structure Prediction Details

Protein: P24D9_ARATH
Organism: Arabidopsis thaliana
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P24D9_ARATH.

Description E-value Query
Range
Subject
Range
gi|109066641, gi... - gi|109066643|ref|XP_001091631.1| PREDICTED: similar to transmembrane emp24 protein transport domain ...
255.0 [0..2] [214..8]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH  60
   61 PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD YMACYTAVDH KPEVTLSIDF 120
  121 DWRT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.537602
Match: PF01105.15
Description: No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVQSKSWSSV AKKSQVEVME FDVKRLIETV NSIHEEMFYL REREEEMQNL NRATNSKMAW  60
   61 LSFLSLFVCL GVAGMQFVHL KTFFEKKKVI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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