| Protein: | PDV1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 272 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDV1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
467.0 | [0..4] | [272..1] |
|
|
366.0 | [0..4] | [272..1] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MGEMEIEEIE AVLEKIWDLH DKLSDEIHLI SKSHFLKSVK PSNRSEKRKN PHGNSGEDKR 60
61 PGYVFIKGFA VDDN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.509 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.454 | c.47.1 | Thioredoxin-like |
| View | Download | 0.377 | d.79.3 | L30e-like |
| View | Download | 0.377 | d.79.3 | L30e-like |
| View | Download | 0.342 | c.47.1 | Thioredoxin-like |
| View | Download | 0.293 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.242 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.205 | a.49.1 | C-terminal domain of B transposition protein |
|
Region A: Residues: [75-163] |
1 11 21 31 41 51
| | | | | |
1 DSTIQEAKSL NAIRTALENL EDQLEFFHTI HTQQRTEKDV AIARLEQSRI LLAMRLAEHH 60
61 GKNYGVLEEA LAFVGSIKSN SHYVSPDHL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.995 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.995 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.967 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.960 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.960 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.951 | N/A | N/A | a.24.18 | Description not found. |
| View | Download | 0.949 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.947 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.911 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.869 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.860 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.845 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.808 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.722 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
|
Region A: Residues: [164-272] |
1 11 21 31 41 51
| | | | | |
1 YDSSRNPDGA NSIPDGIESN FVINAFASTF GFAKRALGFN HVKGVLGNAA IFAISVVAML 60
61 HLHQVATSEH HLQKKEDRFY RSQQRKTYGR DKSSADRSLD HLDVMMARG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.774 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.653 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.636 | a.25.1 | Ferritin-like |
| View | Download | 0.609 | a.246.1 | Description not found. |
| View | Download | 0.565 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.565 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.527 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.507 | a.7.1 | Spectrin repeat |
| View | Download | 0.486 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.393 | a.74.1 | Cyclin-like |
| View | Download | 0.388 | a.74.1 | Cyclin-like |
| View | Download | 0.375 | a.278.1 | Description not found. |
| View | Download | 0.371 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.343 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
