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View Structure Prediction Details

Protein: gi|15242586, gi|...
Organism: Arabidopsis thaliana
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242586, gi|....

Description E-value Query
Range
Subject
Range
gi|55740679, gi|... - gi|55740679|gb|AAV63932.1| hypothetical protein At5g48040 [Arabidopsis thaliana], gi|15238875|ref|NP...
422.0 [0..57] [453..37]
gi|47496868, gi|... - gi|50908051|ref|XP_465514.1| tyrosine-specific protein phosphatase-like [Oryza sativa (japonica cult...
418.0 [0..60] [395..53]
gi|89257625 - gi|89257625|gb|ABD65113.1| hypothetical protein 31.t00019 [Brassica oleracea]
395.0 [0..26] [447..17]

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Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMALTQLVP SSPEKLFCFS SFFLPSIPLE IRRSNVTTKT SSKKLGSLSL NISCSAHKIV  60
   61 RSPSLDRHVV KQNRVRFVQK LNTLLLSKPK HYIPIEILYK CRSYLCIENP LAILSMIRRY 120
  121 PTIFELFTTP TPHLPMNATK PLSQLCVRLT SAASSLAMQE LNLKSEISDK LATKLQKLLM 180
  181 LSSHRRLLLS KLVHIAPDFG FPPNFRSRLC NDYPDKFKTV DTSYGRALEL VSSDPELANQ 240
  241 MPSPEVDRGL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [251-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVDRPLKFKR LNLRRGLNLK RRHQGFLIKF RESPDVCPYK MSSDYLASES IEAEKRACAV  60
   61 VREVLGLTVE KRTLIDHLTH FRKEFSLPNK LRDLIVRHPE LFYVSIKGMR DSVFLVEAYN 120
  121 DNGDLLDKDE RLVIRERLID LIQEGKRIRR ERRR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [405-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGATLGDKSV EEKRKDDETI DDYDSDLDDE YEDGFENLFD SEDLGVEYHF DEEDDDDEAG  60
   61 VNGESVEYWS RKLSSSGSSS DEANSAVESW 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle