YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15227300, gi\|...
Organism:	Arabidopsis thaliana
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15227300, gi|....

Description	E-value	Query Range	Subject Range
gi\|17940744 - gi\|17940744\|gb\|AAL49751.1\|AF452013_1 aquaporin-like protein [Petunia x hybrida]	79.0	[0..1]	[38..183]
gi\|58700408 - gi\|58700408\|gb\|AAW80918.1\| putative plasma membrane intrinsic protein [Astragalus membranaceus] gi\|58700408\|gb\|A... - putative plasma membrane intrinsic protein [Astragalus membranaceus]	79.0	[0..1]	[38..210]
gi\|82659447 - gi\|82659447\|gb\|ABB88840.1\| aquaporin [Stevia rebaudiana]	79.0	[0..1]	[38..210]
PIP24_ARATH - Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1	78.0	[0..1]	[38..214]
gi\|7649310 - gi\|7649310\|gb\|AAF65845.1\|AF255795_1 aquaporin 1 [Allium cepa]	78.0	[0..1]	[38..220]
gi\|8071620 - gi\|8071620\|gb\|AAF71816.1\|AF141642_1 putative aquaporin PIP2-1 [Vitis berlandieri x Vitis rupestris]	77.0	[0..1]	[38..211]
gi\|55982653, gi\|... - gi\|55982653\|gb\|AAV69744.1\| aquaporin [Vitis vinifera], gi\|225449054\|ref\|XP_002274555.1\| PREDICTED: a...	77.0	[0..1]	[38..211]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHLATIPIT GTGINPAKSF GIARYNLVKF PRLAWDPRLA NPPPTTRLEL LPSSPAPFPP  60
   61 TPSQE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.61
Match:	1j4nA
Description:	Aquaporin-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits