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View Structure Prediction Details

Protein: GPLPB_ARATH
Organism: Arabidopsis thaliana
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPLPB_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
380.0 [0..3] [324..1202]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT  60
   61 GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR FVGHTKDVLS VAFSTDNRQI 120
  121 VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL 180
  181 QNCKLRNTLA GHSGYLNTVA VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL 240
  241 CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL 300
  301 NWSADGNTLF SGYTDGVIRV WGIGRY

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Detection Method: PSI-BLAST
Confidence: 67.045757
Match: 1trjA
Description: Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle