YRC Public Data Repository - Protein Structure Prediction

Protein:	OSGP2_ARATH
Organism:	Arabidopsis thaliana
Length:	480 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSGP2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|77555725, gi\|... - gi\|77555725\|gb\|ABA98521.1\| Glycoprotease family protein, expressed [Oryza sativa (japonica cultivar-...	365.0	[0..53]	[472..46]
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	359.0	[0..84]	[445..1]
gi\|23466489, gi\|... - gi\|23466489\|ref\|ZP_00122077.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	358.0	[0..84]	[445..1]
gi\|68057326, gi\|... - gi\|68249127\|ref\|YP_248239.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 86-028NP], gi... gi\|144984027 - gi\|144984027\|gb\|EDJ91464.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae R3021] gi\|145630292 - gi\|145630292\|ref\|ZP_01786073.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 22.4-21]	357.0	[0..84]	[447..1]
GCP_HAEIN - Probable O-sialoglycoprotein endopeptidase OS=Haemophilus influenzae GN=gcp PE=3 SV=1 TSAD_HAEIN - tRNA N6-adenosine threonylcarbamoyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11...	356.0	[0..84]	[447..1]
TSAD_ACTP2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strai... gi\|32035197 - gi\|32035197\|ref\|ZP_00135231.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ACTPJ - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain... TSAD_ACTP7 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain...	355.0	[0..84]	[446..1]
gi\|15603103, gi\|... - gi\|15603103\|ref\|NP_246175.1\| O-sialoglycoprotein endopeptidase [Pasteurella multocida subsp. multoci...	355.0	[0..84]	[447..1]
gi\|148715356, gi... - gi\|148825196\|ref\|YP_001289949.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae PittEE], ... gi\|229846613, gi... - gi\|229846613\|ref\|ZP_04466721.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 7P49H1], g... gi\|53733065 - gi\|53733065\|ref\|ZP_00155523.2\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|148827721, gi... - gi\|148827721\|ref\|YP_001292474.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae PittGG], ...	355.0	[0..84]	[447..1]
gi\|59712856, gi\|... - gi\|59712856\|ref\|YP_205632.1\| peptidase [Vibrio fischeri ES114], gi\|59480957\|gb\|AAW86744.1\| predicted...	354.0	[0..84]	[447..1]
gi\|53733316 - gi\|53733316\|ref\|ZP_00156356.2\| COG0533: Metal-dependent proteases with possible chaperone activity [...	354.0	[0..84]	[447..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT  60
   61 RFYSTETRIS SLPYSENPNF DD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.768	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.698	g.79.1	Description not found.
View	Download	0.647	d.24.1	Pili subunits
View	Download	0.637	b.5.1	alpha-Amylase inhibitor tendamistat
View	Download	0.632	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.563	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.504	b.34.5	Translation proteins SH3-like domain
View	Download	0.465	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.442	c.51.1	Anticodon-binding domain of Class II aaRS

Predicted Domain #2

Region A:
Residues: [83-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLVVLGIETS CDDTAAAVVR GNGEILSQVI SSQAELLVQY GGVAPKQAEE AHSRVIDKVV  60
   61 QDALDKANLT EKDLSAVAVT IGPGLSLCLR VGVRKARRVA GNFSLPIVGV HHMEAHALVA 120
  121 RLVEQELSFP FMALLISGGH NLLVLAHKLG QYTQLGTTVD DAIGEAFDKT AKWLGLDMHR 180
  181 SGGPAVEELA LEGDAKSVKF NVPMKYHKDC NFSYAGLKTQ VRLAIEAKEI DAKCPVSSAT 240
  241 NEDRRNRADI AASFQRVAVL HLEEKCERAI DWALELEPSI KHMVISGGVA SNKYVRLRLN 300
  301 NIVENKNLKL VCPPPSLCTD NGVMVAWTGL EHFRVGRYDP PPPATEPEDY VYDLRPRWPL 360
  361 GEEYAKGRSE ARSMRTARIH PSLTSIIRAD SLQQQTQT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.30103
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits