YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40707
Organism: Caenorhabditis elegans
Length: 154 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40707.

Description E-value Query
Range
Subject
Range
gi|50756309 - gi|50756309|ref|XP_415105.1| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]
211.0 [0..3] [152..230]

Back

Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSCRQPRT TQEKKKRKKL QMFVRLMPKN QRKSSIVQKL ISPFKDGSTC KEEEQRLCYA  60
   61 AGKGDCGIKA AATIYVNCEL LGGAKKRKKK VYIIPKKNNI SQRKSSSPSP KYFKIDENGK 120
  121 ISRLPTGIPT VSIQREAFMT QPTTLRKMSQ HPCR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2ojrA
Description: No description for 2ojrA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle