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View Structure Prediction Details

Protein: SUC6_ARATH
Organism: Arabidopsis thaliana
Length: 492 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUC6_ARATH.

Description E-value Query
Range
Subject
Range
SUC9_ARATH - Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1
250.0 [0..1] [492..1]

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Predicted Domain #1
Region A:
Residues: [1-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLQANKDA AAVNRQSSSS SADLNGPSPM RKMISVASIA AGIQFGWALQ LSLLTPYVQL  60
   61 LGVPHKWSSF IWLCGPVSGL LVQPSVGYFS DRCKSRFGRR RPFIAMGALL VAVAVVLIGY 120
  121 AADFGHSMGD KVDEPVKMRA VVIFALGFWI LDVANNTLQG PCRAFLGDLA AGDAKKTRTA 180
  181 NAFFSFFMAV GNVLGYAAGS YTNLYKIFPF TMTKACDIYC ANLKSCFFLS ITLLLVVTII 240
  241 ALWYVEDKQW SPKADSDNEK TPFFGEIFGA FKVMKRPMWM LLIVTALNWI AWFPFLLYDT 300
  301 DWMGREVYGG DSKGDDKMKK LYNQGIHVGG LGLMLNSIVL GFMSLGIEGI SRKMGGAKRL 360
  361 WGAVNIILAV CLAMTVLVTK KAEEHRRIAG PMALPTDGIR AGALTLFALL GIPLAITFSI 420
  421 PFALASIISS SSGAGQGLSL GVLNMTIVIP QMVVSFGVGP IDALFGGGNL PGFVVGAIAA 480
  481 AISSVVAFSV LP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle