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View Structure Prediction Details

Protein: CSLD6_ARATH
Organism: Arabidopsis thaliana
Length: 979 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CSLD6_ARATH.

Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDGESPLRH PRISHVSNSG SDFGSSSDYN KYLVQIPPTP DNNPGPASLS IVLLEIDSNQ  60
   61 ESVPSVSGDI VSGSSGKDNE PDLTDVRINV GEEEEDDTLL SKISYSLTRV VKISPIIIAL 120
  121 YRILIVVRVV SLALFLFWRI RNPNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KALWLWLLSV ICELWFAFSW LLDQIPKLFP VNHATDIEAL KATFETPNPD NPTGKSDLPG  60
   61 IDVFVSTADA EKEPPLVTAN TILSILSVDY PVEKLSVYIS DDGGSLVTFE AIAEAASFAK 120
  121 IWVPFCRKH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [275-553]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIEPRNPESY FGLKRDPYKD KVRHDFVRER RYVKRAYDEF KVRVNALPHS IRRRSDAFNS  60
   61 KEEIKALEKW KHWKVKVEED QIKEPRPALV APKATWMSDG THWPGTWAVS GPHHSRGDHA 120
  121 SVIQVLLDPP GDEPVEGKGG EGRALDLEGV DIRLPMLVYV SREKRPGYDH NKKAGAMNAL 180
  181 VRASAIMSNG PFILNLDCDH YVYNSRAFRD GICFMMDHDG DRVSYVQFPQ RFEGIDPSDR 240
  241 YANKNTVFFD INLRALDGIQ GPMYVGTGCL FRRTALYGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 2z87A
Description: No description for 2z87A was found.

Predicted Domain #4
Region A:
Residues: [554-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPPDVFVVEE EPSGSYCFPL IKKRSPATVA SEPEYYTDEE DRFDIGLIRK QFGSSSMLVN  60
   61 SVKVAEFEGR PLATVHSSRL GRPPGSLTGS RKPLDFATVN EAVNVISCWY EDKTEWGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 2ffuA
Description: Crystal Structure of Human ppGalNAcT-2 complexed with UDP and EA2
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [672-860]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVGWIYGSVT EDVVTGFRMH EKGWRSFYCV TEPDAFRGSA PINLTDRLHQ VLRWATGSVE  60
   61 IFFSRNNAIF AGPKLKLLQR IAYLNVGIYP FTSIFILTYC FLPPLSLFSG HFVVETLTGS 120
  121 FLIYLLIITL SLCGLAVLEV KWSGISLEEW WRNEQFWLIG GTSAHLVAVL QGILKVIAGV 180
  181 EISFTLTSK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [861-979]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTGGDDEDD EFADLYLFKW TALMIPPLTI IILNIVAILF AVCRTVFSAN PQWSNLLGGT  60
   61 FFASWVLLHM YPFAKGLMGR GGKTPTVVYV WSGLIAICLS LLYITIKNSE IDGGSFMLV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle