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View Structure Prediction Details

Protein: RH53_ARATH
Organism: Arabidopsis thaliana
Length: 616 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH53_ARATH.

Description E-value Query
Range
Subject
Range
gi|62088770 - gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
388.0 [0..44] [615..107]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE  60
   61 AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG GDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAISELGISP EIVKALSSKG IEKLFPIQKA VLEPAMEGRD MIGRARTGTG KTLAFGIPII  60
   61 DKIIKYNAKH GRGRNPLCLV LAPTRELARQ VEKEFRESAP SLDTICLYGG TPIGQQMRQL 120
  121 DYGVDVAVGT PGRVIDLMKR GALNLSEVQF VVLDEADQML QVGFAEDVEI ILEKLPEKRQ 180
  181 SMMFSATMPS WIRSLTKKYL NNPLTVDLVG DSDQKLADGI TTYSIIADSY GRASIIGPLV 240
  241 TEHAKGGKCI VFTQTKRDAD RLSYALARSF KCEALHGDIS QSQRERTLAG FRDGHFNILV 300
  301 ATDVAARGLD VPNVDLIIHY ELPNNTETFV HRTGRTGRAG KKGSAILIYS QDQSRAVKII 360
  361 EREVGSRFTE LPSIAVERGS ASMFEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.30103
Match: 2i4iA
Description: No description for 2i4iA was found.

Predicted Domain #3
Region A:
Residues: [490-616]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGSRSGGSFG GGMRDRGSSF GGRSGGGGYG GSSGGYGGGR SGGSSNRYSG DSDRSGFGSF  60
   61 GMRSPEGYGS DRSSQSGGRS SFGGGRSGGS SNNRSSGFGD FGSDRSSQSG GRSSFGGFGS 120
  121 NDGKRSY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle