YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25352290, gi\|...
Organism:	Arabidopsis thaliana
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25352290, gi|....

Description	E-value	Query Range	Subject Range
NAC2_ARATH - NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2	273.0	[0..12]	[291..3]
gi\|14485513 - gi\|14485513\|emb\|CAC42087.1\| putative NAC domain protein [Solanum tuberosum]	272.0	[0..4]	[312..1]
gi\|82400207, gi\|... - gi\|82400211\|gb\|ABB72844.1\| NAC protein 1 splice variant 2 [Elaeis guineensis], gi\|82400207\|gb\|ABB728...	270.0	[0..3]	[286..1]
gi\|31322578 - gi\|31322578\|gb\|AAP35054.1\| NAC-domain protein 18 [Brassica napus]	270.0	[0..11]	[291..1]
NAC68_ORYSJ - NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1 NAC68_ORYSA - NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice)	269.0	[0..1]	[294..1]
gi\|40647397, gi\|... - gi\|40647397\|gb\|AAR88435.1\| NAC domain protein [Lycopersicon esculentum], gi\|195549549\|gb\|ACG50002.1\|...	268.0	[0..4]	[312..1]
gi\|6730938 - gi\|6730938\|dbj\|BAA89798.1\| OsNAC4 protein [Oryza sativa] gi\|15528779, gi\|... - gi\|56785066\|dbj\|BAD82705.1\| OsNAC4 protein [Oryza sativa Japonica Group], gi\|15528779\|dbj\|BAB64820.1...	267.0	[0..4]	[294..7]
gi\|66394512, gi\|... - gi\|66394512\|gb\|AAY46122.1\| NAC domain protein NAC2 [Glycine max], gi\|62546185\|gb\|AAX85979.1\| NAC2 pr...	267.0	[0..10]	[315..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQGDHQQHK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE  60
   61 LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT GKDKEIFNST TSELVGMKKT 120
  121 LVFYRGRAPR GEKTCWVMHE YRLHSKSSYR TSKQDEWVVC RVFKKTEATK KYISTSSSST 180
  181 SHHHNNHTRA SILSTNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1ut4A
Description:	Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [198-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNPNYSSDLL QLPPHLQPHP SLNINQSLMA NAVHLAELSR VFRASTSTTM DSSHQQLMNY  60
   61 THMPVSGLNL NLGGALVQPP PVVSLEDVAA VSASYNGENG FGNVEMSQCM DLDGYWPSY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.523	a.246.1	Description not found.
View	Download	0.282	a.25.1	Ferritin-like
View	Download	0.282	a.25.1	Ferritin-like
View	Download	0.273	a.24.23	Description not found.
View	Download	0.261	a.24.3	Cytochromes
View	Download	0.259	a.29.13	Description not found.
View	Download	0.257	a.24.3	Cytochromes
View	Download	0.204	a.69.1	C-terminal domain of alpha and beta subunits of F1 ATP synthase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits