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View Structure Prediction Details

Protein: ELIP1_ARATH
Organism: Arabidopsis thaliana
Length: 195 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELIP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036948 - gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
182.0 [0..1] [195..1]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASFNMQS VFAGGLTTRK INTNKLFSAG SFPNLKRNYP VGVRCMAEGG PTNEDSSPAP  60
   61 STSAAQPLPK SPSPPPPMKP KVSTKFSDLL AFSGPAPERI NGRLAMVGFV AALAVELSKG 120
  121 ENVLAQISDG GVSWFLGTTA ILTLASLVPL FKGISVESKS KGIMTSDAEL WNGRFAMLGL 180
  181 VALAFTEFVK GGTLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.30103
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle