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View Structure Prediction Details

Protein: gi|15229746, gi|...
Organism: Arabidopsis thaliana
Length: 505 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15229746, gi|....

Description E-value Query
Range
Subject
Range
gi|15529153 - gi|15529153|gb|AAK97671.1| AT4g23490/F16G20_190 [Arabidopsis thaliana]
452.0 [0..88] [504..106]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANRGGGEH GQHEALKLSS FFFMPERPRD YLVLFTRFSV LTCLIVSVSL VLRATFLSPS  60
   61 ARDYSTTYGL KLTAVPQKAI ALPPSASVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTNISHIFFS IAGAAETWID RSQYISLWWR NTTRGFVWLD EPVKIPENHS DVRFSIPTRV  60
   61 SDPGWTRFKF SSSRAAVRIA RIIWDSYRLN LPNVRWFVMG DDDTVFFTEN LVKVLSKYDH 120
  121 EQMWYIGGNS ESVEQDVMHA YDMAFGGGGF ALSRPLAARL AAAMDDCLQR YFYFYGSDQR 180
  181 IASCISEIGV PFTEERGFHQ LDIRGDPYGF LAAHPLAPLV SLHHLVYLDP MFPNKNPIES 240
  241 LQTLMKPYTL DPNRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 2j0aA
Description: No description for 2j0aA was found.

Predicted Domain #3
Region A:
Residues: [345-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQQINCHDRK RQWSISISWG YTIQIYTYFL TATELTTPLQ TFKTWRSSSD GPFVFNTRPL  60
   61 KPDPCERPVT YFMDGAEDVR DSGTKTWYSI GDKNYGHCGK IEHTRLTKVK RILVTSMKTD 120
  121 PEYWNKAPRR QCCEVMEGKV GKRKEKEMLL RIRKCRSLEK I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle