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View Structure Prediction Details

Protein: CCA24_ARATH
Organism: Arabidopsis thaliana
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA24_ARATH.

Description E-value Query
Range
Subject
Range
gi|114599953 - gi|114599953|ref|XP_517728.2| PREDICTED: cyclin B1 [Pan troglodytes]
325.0 [0..32] [454..105]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD  60
   61 EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK KGRQSSSSSK VASSSATSQV 120
  121 TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK 180
  181 FVDIDSDDKD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLLCSLYAPD IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD  60
   61 TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF ITDNTYTRDQ 120
  121 VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF 180
  181 LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT LEHYTTYKAS DLKASVHALQ DLQLNTKGCS 240
  241 LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.522879
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle