YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18405254, gi\|...
Organism:	Arabidopsis thaliana
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18405254, gi|....

Description	E-value	Query Range	Subject Range
gi\|14532554, gi\|... - gi\|18655399\|gb\|AAL76155.1\| AT3g27160/MYF5_3 [Arabidopsis thaliana], gi\|14532554\|gb\|AAK64005.1\| AT3g2...	175.0	[0..1]	[183..1]
gi\|188036222, gi... - gi\|188036222\|pdb\|3BBN\|U Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9....	165.0	[0..15]	[183..30]
gi\|125559982, gi... - gi\|125559982\|gb\|EAZ05430.1\| hypothetical protein OsI_27643 [Oryza sativa Indica Group], gi\|125559981... gi\|42407598, gi\|... - gi\|50940623\|ref\|XP_479839.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|42407598\|d...	111.0	[0..18]	[183..14]
gi\|78496621, gi\|... - gi\|90425437\|ref\|YP_533807.1\| ribosomal protein S21 [Rhodopseudomonas palustris BisB18], gi\|90107451\|...	97.0	[0..68]	[162..3]
gi\|83718839, gi\|... - gi\|83718839\|ref\|YP_443689.1\| ribosomal protein S21-related protein [Burkholderia thailandensis E264]...	94.0	[0..86]	[154..73]
gi\|90336854, gi\|... - gi\|90418774\|ref\|ZP_01226685.1\| possible ribosomal protein S21 [Aurantimonas sp. SI85-9A1], gi\|903368... gi\|90336854, gi\|... - gi\|90418774\|ref\|ZP_01226685.1\| possible ribosomal protein S21 [Aurantimonas sp. SI85-9A1], gi\|903368...	91.0	[0..72]	[159..30]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASFSLTSF ISFISPFKSQ TKPTPPPNLT LPSPTISQRR RNDLAIESMA VEETSSTASS  60
   61 LSSELASVIC PSLAYSNTLF FSSGY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVQVFVEDNE SEERLVNRFR REVMRTGVIQ ECKRRRYFEN KQDEKKRRTR DAAKRNKKRR  60
   61 PQARFTQETR EEAAAATKSK KKDEEEDNWE MPGGDVPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1vs5U
Description:	No description for 1vs5U was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits