YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15229675, gi|...
Organism: Arabidopsis thaliana
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15229675, gi|....

Description E-value Query
Range
Subject
Range
gi|147870 - gi|147870|gb|AAA24649.1| single-strand DNA-binding protein (ssb) [Escherichia coli]
175.0 [0..75] [214..1]

Back

Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSMATLSR RLYRSLLSNP RISQASMSFC TNNITSPEDS DFDELESPIE PKASDPVSRF  60
   61 SGEERVMEER PLENGLDSGI FKAILVGQVG QLPLQKKLKS GRTVTLFSVG TGGIRNNRRP 120
  121 LINEDPREYA SRSAVQWHRV SVYPERLADL VLKNVEPGTV IYLEGNLETK IFTDPVTGLV 180
  181 RRIREVAIRR NGRVVFLGKA GDMQQPSSAE LRGVGYY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.522879
Match: 1kawA
Description: ssDNA-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle