YRC Public Data Repository - Protein Structure Prediction

Protein:	STI_ARATH
Organism:	Arabidopsis thaliana
Length:	1218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STI_ARATH.

Description	E-value	Query Range	Subject Range
STIL1_ARATH - Protein STICHEL-like 1 OS=Arabidopsis thaliana GN=At1g14460 PE=1 SV=1	607.0	[0..1]	[1211..1]
gi\|21957649, gi\|... - gi\|22124822\|ref\|NP_668245.1\| protein disaggregation chaperone [Yersinia pestis KIM], gi\|21957649\|gb\|... gi\|45435364, gi\|... - gi\|45440507\|ref\|NP_992046.1\| protein disaggregation chaperone [Yersinia pestis biovar Microtus str. ...	494.0	[0..336]	[1137..57]
gi\|117624816, gi... - gi\|117624816\|ref\|YP_853729.1\| protein disaggregation chaperone [Escherichia coli APEC O1], gi\|115513... gi\|237706819, gi... - gi\|237706819\|ref\|ZP_04537300.1\| heat shock protein [Escherichia sp. 3_2_53FAA], gi\|226899859\|gb\|EEH8... gi\|91211926, gi\|... - gi\|91211926\|ref\|YP_541912.1\| protein disaggregation chaperone [Escherichia coli UTI89], gi\|91073500\|...	493.0	[0..313]	[1137..33]
gi\|15803116, gi\|... - gi\|15803116\|ref\|NP_289147.1\| protein disaggregation chaperone [Escherichia coli O157:H7 EDL933], gi\|... gi\|227834799, gi... - gi\|227888159\|ref\|ZP_04005964.1\| endopeptidase Clp [Escherichia coli 83972], gi\|227834799\|gb\|EEJ45265... gi\|226839293, gi... - gi\|254037669\|ref\|ZP_04871727.1\| heat shock protein [Escherichia sp. 1_1_43], gi\|226839293\|gb\|EEH7131... gi\|26109361, gi\|... - gi\|26248955\|ref\|NP_754995.1\| protein disaggregation chaperone [Escherichia coli CFT073], gi\|26109361... gi\|209762704, gi... - gi\|25289895\|pir\|\|E85905 heat shock protein [imported] - Escherichia coli (strain O157:H7, substrain ...	492.0	[0..313]	[1137..33]
gi\|85058562, gi\|... - gi\|85058562\|ref\|YP_454264.1\| protein disaggregation chaperone [Sodalis glossinidius str. 'morsitans'...	492.0	[0..336]	[1143..57]
gi\|166960584, gi... - gi\|167421665\|ref\|ZP_02313418.1\| chaperone ClpB [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|167423529, gi... - gi\|167423529\|ref\|ZP_02315282.1\| chaperone ClpB [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|166205898, gi... - gi\|166213111\|ref\|ZP_02239146.1\| chaperone ClpB [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|167051867, gi... - gi\|167399363\|ref\|ZP_02304887.1\| chaperone ClpB [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1... gi\|186697242, gi... - gi\|186894216\|ref\|YP_001871328.1\| protein disaggregation chaperone [Yersinia pseudotuberculosis PB1/+... gi\|89103058 - gi\|89103058\|ref\|ZP_01175654.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin... gi\|108780670, gi... - gi\|108808757\|ref\|YP_652673.1\| protein disaggregation chaperone [Yersinia pestis Antiqua], gi\|1087806... Q66E45\|Q66E45_YERPS - ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpE - Ye... gi\|167470275 - gi\|167470275\|ref\|ZP_02334979.1\| protein disaggregation chaperone [Yersinia pestis FV-1] gi\|77633070, gi\|... - gi\|77633070\|ref\|ZP_00795224.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin... gi\|108774634, gi... - gi\|229901202\|ref\|ZP_04516325.1\| Clp ATPase [Yersinia pestis Nepal516], gi\|229681927\|gb\|EEO78020.1\| C... gi\|170025564, gi... - gi\|170025564\|ref\|YP_001722069.1\| protein disaggregation chaperone [Yersinia pseudotuberculosis YPIII... gi\|165921516, gi... - gi\|165926588\|ref\|ZP_02222420.1\| chaperone ClpB [Yersinia pestis biovar Orientalis str. F1991016], gi... gi\|165990884, gi... - gi\|166009977\|ref\|ZP_02230875.1\| chaperone ClpB [Yersinia pestis biovar Antiqua str. E1979001], gi\|16... gi\|229695257, gi... - gi\|229838891\|ref\|ZP_04459050.1\| Clp ATPase [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229695... gi\|229687860, gi... - gi\|229899458\|ref\|ZP_04514601.1\| Clp ATPase [Yersinia pestis biovar Orientalis str. India 195], gi\|22... gi\|229896559, gi... - gi\|229896559\|ref\|ZP_04511726.1\| Clp ATPase [Yersinia pestis Pestoides A], gi\|229700337\|gb\|EEO88369.1... gi\|153997675, gi... - gi\|153997675\|ref\|ZP_02022775.1\| Clp ATPase [Yersinia pestis CA88-4125], gi\|149289312\|gb\|EDM39392.1\| ... gi\|145600170, gi... - gi\|145600170\|ref\|YP_001164246.1\| protein disaggregation chaperone [Yersinia pestis Pestoides F], gi\|... gi\|77631820, gi\|... - gi\|77631820\|ref\|ZP_00794406.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin... gi\|51595198, gi\|... - gi\|51595198\|ref\|YP_069389.1\| protein disaggregation chaperone [Yersinia pseudotuberculosis IP 32953]...	492.0	[0..336]	[1137..50]
gi\|187733901, gi... - gi\|75178201\|ref\|ZP_00698260.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Shigel...	491.0	[0..313]	[1137..29]
CLPB_YERPE - Chaperone protein ClpB OS=Yersinia pestis GN=clpB PE=3 SV=2 gi\|16123432, gi\|... - gi\|218930300\|ref\|YP_002348175.1\| protein disaggregation chaperone [Yersinia pestis CO92], gi\|1612343...	491.0	[0..336]	[1137..50]
CLPB_SHIFL - Chaperone protein ClpB OS=Shigella flexneri GN=clpB PE=3 SV=1 gi\|110616085, gi... - gi\|110806537\|ref\|YP_690057.1\| protein disaggregation chaperone [Shigella flexneri 5 str. 8401], gi\|1... gi\|30063993, gi\|... - gi\|30063993\|ref\|NP_838164.1\| protein disaggregation chaperone [Shigella flexneri 2a str. 2457T], gi\|...	491.0	[0..313]	[1137..29]
gi\|147365 - gi\|147365\|gb\|AAA24422.1\| ATP-dependent protease binding subunit [Escherichia coli]	490.0	[0..313]	[1137..29]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSRVSDLS KLHLKKELTQ IRKAGRVLRD PGTTSSWKSP LDSSRSVALL ETPASRNGGS  60
   61 SSQFPIRGES STNRRGKEKK VFLYNWKTQK SSSEKSGLAK NGKEEEEEEE DASSWTQASV 120
  121 NDDDDVSDAR NGGDSYRREI QSASMGFRCR DTNLASQGVS KMRKSNVGSC KKKSKKKISS 180
  181 SRLDCLSKYQ PRDDIVARNC NAGSDDTEEE LSNSEDLRKV TGASPLLLKL KQKNWSRSSS 240
  241 RLLRANNRKE DSSCTYNSTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.09691
Match:	1ksfX
Description:	N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [261-746]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALSTSSYNMY AVRNPSTVGS WDGTTTSVND GDDELDDNLD LPGRQGCGIP CYWTKKAMKH  60
   61 RGGCRSCCSP SFSDTLRRTG SSILCGSQSV YRRHNRHSSG GYSKQKIACR SAQGVLPLLS 120
  121 YGGDGRGGSS LGTGLSDDEL STNYGELDLE AQSRLDGRRW STSYRSQDGL EAVALDGEEE 180
  181 EGSTPETIRS FSQKYRPMFF EELIGQSIVV QSLMNAVKRS RIAPVYLFQG PRGTGKTSTA 240
  241 RIFSAALNCV ATEEMKPCGY CKECNDFMSG KSKDFWELDG ANKKGADKVR YLLKNLPTIL 300
  301 PRNSSMYKVF VIDECHLLPS KTWLSFLKFL ENPLQKVVFI FITTDLENVP RTIQSRCQKF 360
  361 LFDKLKDSDI VVRLKKIASD ENLDVDLHAL DLIAMNADGS LRDAETMLEQ LSLLGKRITT 420
  421 ALVNELVGVV SDEKLLELLE LALSSDTAET VKRARELLDL GADPIVLMSQ LASLIMDIIA 480
  481 GTYKVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1e32A
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [747-865]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKYSNAFFD GRNLTEADME GLKHALKLLS EAEKQLRVSN DRSTWFTATL LQLGSMPSPG  60
   61 TTHTGSSRRQ SSRATDDDPA SVSREVMAYK QRIGGLHFSK SASPASVIKR NGNHSHEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.09691
Match:	1jr3A
Description:	gamma subunit; gamma subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [866-995]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSRVIDNNC YKSSSSSQMI ESEGSIASHE NSIASTMMLN QRSSEKLNDI WRKCIERCHS  60
   61 KTLRQLLYTH GKLISISEVE GILVAYIAFG ENDIKLRAER FLSSITNSIE MVLRRSVEVR 120
  121 IILLPETELL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.718	d.58.19	Bacterial exopeptidase dimerisation domain
View	Download	0.677	d.58.19	Bacterial exopeptidase dimerisation domain
View	Download	0.671	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.653	d.109.1	Actin depolymerizing proteins
View	Download	0.653	d.109.1	Actin depolymerizing proteins
View	Download	0.620	d.109.1	Actin depolymerizing proteins
View	Download	0.620	d.109.1	Actin depolymerizing proteins
View	Download	0.614	d.109.1	Actin depolymerizing proteins
View	Download	0.605	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.605	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.593	d.227.1	OsmC-like
View	Download	0.593	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5
View	Download	0.493	d.52.8	Description not found.
View	Download	0.476	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.428	d.198.1	Type III secretory system chaperone

Predicted Domain #5

Region A:
Residues: [996-1218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVPHQTRKPE MTNKSGHLNN IAGLNAETDV EVGSSVESRS KLPMQRIESI IREQRLETAW  60
   61 LQTADKDTPG SIIRVKPERN QILPQEDTYR QTNVASAISS SGLTTHQWVD ELNNEVKLLK 120
  121 IGDNGELQEN LTGTRGQHCP LSPSLLHDTN FGNNKDNLGG YESGSGRVGC NILFCWNTKK 180
  181 TQRRSKSKQV KGTPVRSRRN RKSRFSLFNG CAKPRKAEGN IRR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits