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View Structure Prediction Details

Protein: IF4B2_ARATH
Organism: Arabidopsis thaliana
Length: 549 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF4B2_ARATH.

Description E-value Query
Range
Subject
Range
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
199.0 [0..3] [545..743]

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Predicted Domain #1
Region A:
Residues: [1-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPWGGIGA WADEAERADE EQAAEATATA ADSQSFPSLK EAATAKSSKK KKKMTLSEFT  60
   61 KGAYTAPSSA GLTREQMLQL PTGPRQRSED EMQPGRLGGG FSSYGGGRSS GPPGRMSRDR 120
  121 EDSDGSWGGG GGGRRSYGGF DDDQRGSNSR VSDFPQVSRA DEDDDWGKGK KSLPSFDQGR 180
  181 QGSRYGGGGG SFGGGGGGGA GSYGGGGAGA GSGGGGGFSK ADEVDNWAAG KAKSSTFGSG 240
  241 FRESGPEPDR WARGVLPSGG GVQEERRRLV FEPRKADTEV SETPTAVKTS KPSPFGAARP 300
  301 REQVLAEKGL DWKKLDSDIE AKKGQTSRPS SAQSSRPSSA QSNRSESSAL NNVENVVKPR 360
  361 PKVNPFGDAK PREVLLEEQG KDWRKIDSEL EHRRVDRPET EGERMLKEEI EELRKKLEKE 420
  421 AAIAPESKES QQESDSNHQN LPDLIREKEK NLDLLIRELD DKVRFRPRAV ERPGSSASRG 480
  481 GSYSERPHSR AGSIDESRSV ESMERPRSHG TGDNWPRPVD DRRNFQGSKE RGFFNNRNFD 540
  541 RSSSAREGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle