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View Structure Prediction Details

Protein: SRC2_ARATH
Organism: Arabidopsis thaliana
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRC2_ARATH.

Description E-value Query
Range
Subject
Range
gi|3426060, gi|1... - gi|3426060|emb|CAA07573.1| src2-like protein [Arabidopsis thaliana], pir||T51602 shock protein SRC2 ...
139.0 [0..1] [306..1]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECRSLDLTI ISAEDLKDVQ LIGKQDLYAV VSINGDARTK QKTKVDKDCG TKPKWKHQMK  60
   61 LTVDDAAARD NRLTLVFEIV ADRPIAGDKP VGEVSVPVKE LLDQNKGDEE KTVTYAVRLP 120
  121 NGKAKGSLKF SFKFGEKYTY GSSSGPHAPV PSAMDH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.39794
Match: 1dqvA
Description: Synaptogamin I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [157-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTMDQPVTAY PPGHGAPSAY PAPPAGPSSG YPPQGHDDKH DGVYGYPQQA GYPAGTGGYP  60
   61 PPGAYPQQGG YPGYPPQQQG GYPGYPPQGP YGYPQQGYPP QGPYGYPQQQ AHGKPQKPKK 120
  121 HGKAGAGMGL GLGLGAGLLG GLLVGEAVSD IADMGDMGDM GDMGGFDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

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