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View Structure Prediction Details

Protein: ATL62_ARATH
Organism: Arabidopsis thaliana
Length: 141 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATL62_ARATH.

Description E-value Query
Range
Subject
Range
gi|6729030 - gi|6729030|gb|AAF27026.1|AC009177_16 putative RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana...
111.0 [0..2] [140..41]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDALEAVR SRTFFAILTV FYSIFRCCLA YCNKGDDDHL IHPSHSLHVI KATGINPSVL  60
   61 LSIPVVSFNA NAFKDNIECV VCLSKFIDED KARVLPSCNH CFHFDFTDTW LHSDYTCPNC 120
  121 RKNVEEIQNH ELSLSPNPNS G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 1iymA
Description: EL5 RING-H2 domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle