YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SKL2_ARATH
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|218185074 - gi|218185074|gb|EEC67501.1| hypothetical protein OsI_34782 [Oryza sativa Indica Group]
gi|215712379, gi... - gi|78709051|gb|ABB48026.1| expressed protein [Oryza sativa (japonica cultivar-group)], gi|215712379|...
279.0 [0..69] [382..59]

Back

Predicted Domain #1
Region A:
Residues: [1-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD  60
   61 RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI LSPKDISVDA DGTSLAVKEK 120
  121 RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM 180
  181 QLLKGASIYI VGDSTEINQK VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV 240
  241 AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE 300
  301 ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL 360
  361 GCRGDWPNIK PPGWDPSSDT GPHPQFT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle