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View Structure Prediction Details

Protein: CMT3_ARATH
Organism: Arabidopsis thaliana
Length: 839 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CMT3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKRKRPAT KDDTTKSIPK PKKRAPKRAK TVKEEPVTVV EEGEKHVARF LDEPIPESEA  60
   61 KSTWPDRYKP IEVQPPKASS RKKTKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKVEIIRAR CHYRRAIVDE RQIYELNDDA YVQSGEGKDP FICKIIEMFE GANGKLYFTA  60
   61 RWFYRPSDTV MKEFEILIKK KRVFFSEIQD TNELGLLEKK LNILMIPLNE NTKETIPATE 120
  121 NCDFFCDMNY FLPYDTFEAI QQETMMAISE SSTISSDTDI REGAAAISEI GECSQETEGH 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.045757
Match: 1w4sA
Description: Crystal structure of the proximal BAH domain of polybromo
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [268-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KATLLDLYSG CGAMSTGLCM GAQLSGLNLV TKWAVDMNAH ACKSLQHNHP ETNVRNMTAE  60
   61 DFLFLLKEWE KLCIHFSLRN SPNSEEYANL HGLNNVEDNE DVSEESENED 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [378-705]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGEVFTVDKI VGISFGVPKK LLKRGLYLKV RWLNYDDSHD TWEPIEGLSN CRGKIEEFVK  60
   61 LGYKSGILPL PGGVDVVCGG PPCQGISGHN RFRNLLDPLE DQKNKQLLVY MNIVEYLKPK 120
  121 FVLMENVVDM LKMAKGYLAR FAVGRLLQMN YQVRNGMMAA GAYGLAQFRL RFFLWGALPS 180
  181 EIIPQFPLPT HDLVHRGNIV KEFQGNIVAY DEGHTVKLAD KLLLKDVISD LPAVANSEKR 240
  241 DEITYDKDPT TPFQKFIRLR KDEASGSQSK SKSKKHVLYD HHPLNLNIND YERVCQVPKR 300
  301 KGANFRDFPG VIVGPGNVVK LEEGKERV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.522879
Match: 1dctA
Description: DNA methylase HaeIII
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [706-839]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLESGKTLVP DYALTYVDGK SCKPFGRLWW DEIVPTVVTR AEPHNQVIIH PEQNRVLSIR  60
   61 ENARLQGFPD DYKLFGPPKQ KYIQVGNAVA VPVAKALGYA LGTAFQGLAV GKDPLLTLPE 120
  121 GFAFMKPTLP SELA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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