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View Structure Prediction Details

Protein: RIBF1_ARATH
Organism: Arabidopsis thaliana
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIBF1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553715 - gi|21553715|gb|AAM62808.1| unknown [Arabidopsis thaliana]
283.0 [0..1] [354..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCGGSRASV HLWDHRHPPR LGAKVLRKSS FMLRPCSAIS QQRIKSSFRS HCKTPRKIPA  60
   61 PLDCFSQGDD HPELSAEGLS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.30103
Match: 1jecA
Description: ATP sulfurylase N-terminal domain; ATP sulfurylase central domain; ATP sulfurylase C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [81-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVAGGIVALG KFDALHIGHR ELAIQAARIG TPYLLSFVGL AEVLGWKPRA PIVAKCDRKR  60
   61 VLSSWASYCG NIAPVEFEIE FASVRHLNPQ QFVEKLSREL RVCGVVAGEN YRFGYRASGD 120
  121 ASELVRLCKD FGISAYIINS VMDKNQVSVN TEEEDSKSKE RGQVSSTRVR HALAAGDVRY 180
  181 VTELLGRPHR VISRTRTQDL TSKRGRISLQ TSSLLNLPPG NGVYKACSLI VGDKHPISCK 240
  241 VIVDTSNLYI ETEEERFHNS DESQEFQLLG IEFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.522879
Match: 1mrzA
Description: Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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