YRC Public Data Repository - Protein Structure Prediction

Protein:	RSH3C_ARATH
Organism:	Arabidopsis thaliana
Length:	715 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSH3C_ARATH.

Description	E-value	Query Range	Subject Range
gi\|10443847 - gi\|10443847\|gb\|AAG17607.1\|AF242653_1 ppGpp synthetase/hydrolase Rel [Geobacillus stearothermophilus]	662.0	[0..198]	[715..11]
gi\|56421113, gi\|... - gi\|56421113\|ref\|YP_148431.1\| GTP pyrophosphokinase (ppGpp synthetase) [Geobacillus kaustophilus HTA4...	661.0	[0..198]	[715..11]
gi\|20516195, gi\|... - gi\|20807650\|ref\|NP_622821.1\| guanosine polyphosphate pyrophosphohydrolase/synthetase [Thermoanaeroba... gi\|20807650 - gi\|20807650\|ref\|NP_622821.1\| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Thermoanaeroba...	656.0	[0..216]	[714..23]
gi\|241903868, gi... - gi\|241903868\|ref\|ZP_04788584.1\| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter brockii subsp. ... gi\|76797241, gi\|... - gi\|76797241\|ref\|ZP_00779574.1\| RelA/SpoT protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765...	652.0	[0..216]	[714..23]
gi\|83590516, gi\|... - gi\|83590516\|ref\|YP_430525.1\| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Moorella ther...	650.0	[0..194]	[712..1]
gi\|89201354, gi\|... - gi\|89201354\|ref\|ZP_01180095.1\| RelA/SpoT protein [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8...	642.0	[0..198]	[715..11]
gi\|82402728, gi\|... - gi\|82499307\|ref\|ZP_00884755.1\| RelA/SpoT protein [Caldicellulosiruptor saccharolyticus DSM 8903], gi...	642.0	[0..192]	[714..1]
gi\|42783537, gi\|... - gi\|42783537\|ref\|NP_980784.1\| GTP pyrophosphokinase [Bacillus cereus ATCC 10987], gi\|42739466\|gb\|AAS4...	638.0	[0..198]	[715..11]
gi\|52349121, gi\|... - gi\|52786619\|ref\|YP_092448.1\| RelA [Bacillus licheniformis ATCC 14580], gi\|52349121\|gb\|AAU41755.1\| Re...	637.0	[0..198]	[715..11]
gi\|228935727, gi... - gi\|228935727\|ref\|ZP_04098540.1\| GTP pyrophosphokinase [Bacillus thuringiensis serovar andalousiensis... gi\|118418789, gi... - gi\|118479564\|ref\|YP_896715.1\| GTP diphosphokinase [Bacillus thuringiensis str. Al Hakam], gi\|1184187... gi\|228929452, gi... - gi\|228929452\|ref\|ZP_04092473.1\| GTP pyrophosphokinase [Bacillus thuringiensis serovar pondicheriensi... gi\|228689949, gi... - gi\|229093478\|ref\|ZP_04224581.1\| GTP pyrophosphokinase [Bacillus cereus Rock3-42], gi\|228689949\|gb\|EE... gi\|228811479, gi... - gi\|228948121\|ref\|ZP_04110405.1\| GTP pyrophosphokinase [Bacillus thuringiensis serovar monterrey BGSC... gi\|229141146, gi... - gi\|229141146\|ref\|ZP_04269687.1\| GTP pyrophosphokinase [Bacillus cereus BDRD-ST26], gi\|228642309\|gb\|E... gi\|229123948, gi... - gi\|229123948\|ref\|ZP_04253140.1\| GTP pyrophosphokinase [Bacillus cereus 95/8201], gi\|228659250\|gb\|EEL... gi\|229198534, gi... - gi\|229198534\|ref\|ZP_04325238.1\| GTP pyrophosphokinase [Bacillus cereus m1293], gi\|228585037\|gb\|EEK43... gi\|228625475, gi... - gi\|229158022\|ref\|ZP_04286093.1\| GTP pyrophosphokinase [Bacillus cereus ATCC 4342], gi\|228625475\|gb\|E... gi\|196044908, gi... - gi\|196044908\|ref\|ZP_03112142.1\| GTP diphosphokinase [Bacillus cereus 03BB108], gi\|196024396\|gb\|EDX63... gi\|206745704, gi... - gi\|206975952\|ref\|ZP_03236862.1\| GTP diphosphokinase [Bacillus cereus H3081.97], gi\|206745704\|gb\|EDZ5... gi\|254724667 - gi\|254724667\|ref\|ZP_05186450.1\| GTP diphosphokinase (GTP pyrophosphokinase) [Bacillus anthracis str.... gi\|195993071, gi... - gi\|196034529\|ref\|ZP_03101938.1\| GTP diphosphokinase [Bacillus cereus W], gi\|195993071\|gb\|EDX57030.1\|... gi\|196029959, gi... - gi\|196039332\|ref\|ZP_03106638.1\| GTP diphosphokinase [Bacillus cereus NVH0597-99], gi\|196029959\|gb\|ED... gi\|222097852, gi... - gi\|222097852\|ref\|YP_002531909.1\| GTP diphosphokinase (GTP pyrophosphokinase) [Bacillus cereus Q1], g... gi\|47556626, gi\|... - gi\|47566596\|ref\|ZP_00237418.1\| GTP pyrophosphokinase [Bacillus cereus G9241], gi\|47556626\|gb\|EAL1495... gi\|217066579, gi... - gi\|217961898\|ref\|YP_002340468.1\| GTP diphosphokinase [Bacillus cereus AH187], gi\|217066579\|gb\|ACJ808... gi\|218905602, gi... - gi\|218905602\|ref\|YP_002453436.1\| GTP diphosphokinase [Bacillus cereus AH820], gi\|218537532\|gb\|ACK899... gi\|228917043, gi... - gi\|228917043\|ref\|ZP_04080603.1\| GTP pyrophosphokinase [Bacillus thuringiensis serovar pulsiensis BGS... gi\|225788454, gi... - gi\|225866388\|ref\|YP_002751766.1\| GTP diphosphokinase [Bacillus cereus 03BB102], gi\|225788454\|gb\|ACO2...	637.0	[0..198]	[715..11]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVATTIALY ASPASTVCST AHQINAHISC DLDLNSRSSS ASSSTSSPTI GGLSLLFSGA  60
   61 SVKSSSSSSS SHPSVGEELA SIRHDRSEDR TLSGSFCYSP SKFIGSSYLK RDHQSPVSVL 120
  121 HGPISSGNSP PMRISRDRNL DGGSALRVGS SRLFNGFVRK AIGSCVDYDT DSVLVDEQLP 180
  181 FTMDDGFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1y0fA
Description:	No description for 1y0fA was found.

Predicted Domain #2

Region A:
Residues: [189-584]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GERRQPYARD LLRRAQLKHK IFEDESVIKA FYEAEKAHRG QMRATGDPYL QHCVETAMLL  60
   61 ADIGANSTVV VAGILHDTLD DSFMSYDYIL RTFGSGVADL VEGVSKLSQL SKLARENNTA 120
  121 CKTVEADRLH TMFLAMADAR AVLIKLADRL HNMMTLYALP PVKRQRFAKE TLEIFAPLAN 180
  181 RLGISSWKVK LENLCFKHLH PDQHHEMSDM LEDSFDEAMI TSAIEKLEQA LKKEGISYHV 240
  241 VSGRHKSLYS IYCKMLKKKL TMDEIHDIHG LRLIVDNEKD CYKALGVVHK LWSEVPGKLK 300
  301 DYISHPKFNG YQSLHTVVMG DGTIPLEVQI RTKEMHLQAE FGFAAHWRYK EGDCKHSSFV 360
  361 LQMVEWARWV VTWHFETMSK DGSSICSSEP LCSFPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	1vj7A
Description:	Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis.
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [585-715]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAEDCPFSYK PSGNQEGPVY VIVIENEKMT VQEFPENSTV SDLLRRAGPG SSRWSMYSIP  60
   61 AKEELRPRLN QTPVSDLKCK LKMGDVVELT PAIPDKSLTE YREEIQRMYD RGLAFSRPHR 120
  121 AATGTMVGWG S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits