YRC Public Data Repository - Protein Structure Prediction

Protein:	AB6I_ARATH
Organism:	Arabidopsis thaliana
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AB6I_ARATH.

Description	E-value	Query Range	Subject Range
gi\|146297202, gi... - gi\|82500846\|ref\|ZP_00886240.1\| ATPas [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|82401164\|gb...	338.0	[0..3]	[337..258]
gi\|251806593, gi... - gi\|251809928\|ref\|ZP_04824401.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|57637964, gi\|... - gi\|57867306\|ref\|YP_188972.1\| ABC transporter, permease/ATP-binding protein [Staphylococcus epidermid...	337.0	[0..2]	[337..241]
gi\|1673392, gi\|7... - pir\|\|G69815 ABC transporter (ATP-binding protein) homolog ygaD - Bacillus subtilis, gi\|1673392\|emb\|C... gi\|16077935, gi\|... - gi\|2633192\|emb\|CAB12697.1\| putative ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. ...	337.0	[0..2]	[334..251]
gi\|91203200 - gi\|91203200\|emb\|CAJ72839.1\| similar to multidrug resistance-like ATP-binding protein MdlB [Candidatu...	336.0	[0..3]	[337..302]
gi\|27468468, gi\|... - gi\|27468468\|ref\|NP_765105.1\| ABC transporter ATP-binding protein [Staphylococcus epidermidis ATCC 12...	336.0	[0..2]	[337..241]
gi\|220932731, gi... - gi\|89211049\|ref\|ZP_01189428.1\| ABC transporter, transmembrane region:ABC transporter related [Haloth...	335.0	[0..2]	[337..217]
gi\|68446820, gi\|... - gi\|70726096\|ref\|YP_253010.1\| hypothetical protein SH1095 [Staphylococcus haemolyticus JCSC1435], gi\|...	335.0	[0..2]	[337..241]
MSBA_SYNAS - Lipid A export ATP-binding/permease protein MsbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE...	334.0	[0..3]	[336..254]
gi\|15622139, gi\|... - gi\|15921353\|ref\|NP_377022.1\| ABC transporter ATP-binding protein [Sulfolobus tokodaii str. 7], gi\|15...	334.0	[0..1]	[337..346]
gi\|18310507, gi\|... - gi\|18310507\|ref\|NP_562441.1\| ABC transporter [Clostridium perfringens str. 13], gi\|18145187\|dbj\|BAB8...	332.0	[0..8]	[337..253]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR  60
   61 RSVIVSASSV SSAVDSDSLV EDRDDVGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.348	a.283.1	Description not found.
View	Download	0.329	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.320	a.5.2	UBA-like
View	Download	0.316	d.224.1	SufE-like
View	Download	0.310	d.243.1	Description not found.
View	Download	0.299	c.47.1	Thioredoxin-like
View	Download	0.280	d.8.1	Urease, gamma-subunit
View	Download	0.275	a.159.4	Description not found.
View	Download	0.212	d.39.1	Dynein light chain 8 (DLC8)
View	Download	0.202	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

Predicted Domain #2

Region A:
Residues: [89-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPLLEVRDLR AVIAESRQEI LKGVNLVVYE GEVHAVMGKN GSGKSTFSKV LVGHPDYEVT  60
   61 GGSIVFKGQN LLDMEPEDRS LAGLFMSFQS PVEIPGVSNM DFLNMAFNAR KRKLGQPELD 120
  121 PIQFYSHLVS KLEVVNMKTD FLNRNVNEGF SGGERKRNEI LQLAVLGAEL AILDEIDSGL 180
  181 DVDALQDVAK AVNGLLTPKN SVLMITHYQR LLDYIKPTLI HIMENGRIIK TGDNSLAKLL 240
  241 EKEGYKAISG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	2d3wA
Description:	Crystal Structure of Escherichia coli SufC, an ATPase compenent of the SUF iron-sulfur cluster assembly machinery
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits