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View Structure Prediction Details

Protein: PME14_ARATH
Organism: Arabidopsis thaliana
Length: 333 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME14_ARATH.

Description E-value Query
Range
Subject
Range
gi|8671350 - gi|8671350|emb|CAB95025.1| pectin methylesterase [Nicotiana tabacum]
354.0 [0..15] [333..246]

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Predicted Domain #1
Region A:
Residues: [1-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFFILFLSI ISPIESVDQR IHHPSKCDHL SKFPTKGFTM VLKVSLNGCG RFKRVQDAID  60
   61 ASIGSSQSKT LILIDFGIYR ERFIVHENKN NLVVQGMGYS RTSIEWNNTT ASSNGTFSSF 120
  121 SVAVFGEKFT AYNISFKNTA PAPNPGAVDA QAVALKVVGD KAAFYGCGFY GNQDTLLDQE 180
  181 GRHFFKGCFI EGSIDFIFGN GRSLYEDCTL HSIAKENTIG CITANGKDTL KDRTGFVFVN 240
  241 CKITGSARVW LGRAWRPYAR VIFSKTYMSR VVSLDGWNDM GDPKTQRTVY YGEHRCYGPG 300
  301 ANHSKRVTYA KLLSDVEAAP FTNISFIDGE EWL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.39794
Match: 1gq8A
Description: Pectin methylesterase PemA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle