YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CLC2_ARATH
Organism: Arabidopsis thaliana
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLC2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593842 - gi|21593842|gb|AAM65809.1| unknown [Arabidopsis thaliana]
313.0 [0..1] [258..1]

Back

Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS  60
   61 NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI QLEEKEKREK ELLKQIIEEA 120
  121 DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.39794
Match: 1xi4J
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [176-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPTIEKRRGK KEQQDPKKPT VSVIQGPKPG KPTDLTRMRQ ILVKLKHNPP SHLKLTSQPP  60
   61 SEEAAAPPKN VPETKPTEAV TAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle